Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g01030.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4764
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.30


Found at i:4626 original size:4 final size:5

Alignment explanation


    Indices: 4595--4641  Score: 51
    Period size: 5  Copynumber: 9.0  Consensus size: 5

       4585 TAGGAAGATA

                                        *                           
       4595 TTATT TTATT TTCATT TT-TGT TTTTAT TTATT TTATT TTATT TTATT
          1 TTATT TTATT TT-ATT TTAT-T TTAT-T TTATT TTATT TTATT TTATT

       4642 AAATTAATTA


Statistics
Matches: 37,  Mismatches: 2, Indels: 6
        0.82            0.04        0.13

Matches are distributed among these distances:
   4    1  0.03
   5   26  0.70
   6   10  0.27

ACGTcount: A:0.17, C:0.02, G:0.02, T:0.79


Consensus pattern (5 bp):   
TTATT
Done.