Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g01039.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2314
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.32


Found at i:1241 original size:30 final size:30

Alignment explanation


    Indices: 1205--1266  Score: 115
    Period size: 30  Copynumber: 2.1  Consensus size: 30

       1195 AAGAGGGTGT

                                          
       1205 GTTTGTTTACATGCAGAAATAGTAGAAAGA
          1 GTTTGTTTACATGCAGAAATAGTAGAAAGA

                             *            
       1235 GTTTGTTTACATGCAGAGATAGTAGAAAGA
          1 GTTTGTTTACATGCAGAAATAGTAGAAAGA

              
       1265 GT
          1 GT

       1267 GACCTTTTAT


Statistics
Matches: 31,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  30   31  1.00

ACGTcount: A:0.37, C:0.06, G:0.26, T:0.31


Consensus pattern (30 bp):   
GTTTGTTTACATGCAGAAATAGTAGAAAGA
Done.