Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g01045.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2154
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29


Found at i:65 original size:2 final size:2

Alignment explanation


    Indices: 58--117  Score: 111
    Period size: 2  Copynumber: 30.0  Consensus size: 2

         48 CTCAAACCCT

                                                                          
         58 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
          1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC

                           *          
        100 TC TC TC TC TC CC TC TC TC
          1 TC TC TC TC TC TC TC TC TC

        118 ACAGTTTCCA


Statistics
Matches: 56,  Mismatches: 2, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
   2   56  1.00

ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48


Consensus pattern (2 bp):   
TC

Done.