Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00184.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5776
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.30


Found at i:5518 original size:14 final size:14

Alignment explanation


    Indices: 5499--5528  Score: 60
    Period size: 14  Copynumber: 2.1  Consensus size: 14

       5489 ACTTTCCAAA

                          
       5499 CTCTGCCCTCTCCC
          1 CTCTGCCCTCTCCC

                          
       5513 CTCTGCCCTCTCCC
          1 CTCTGCCCTCTCCC

              
       5527 CT
          1 CT

       5529 ATTTCTTTTT


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   16  1.00

ACGTcount: A:0.00, C:0.63, G:0.07, T:0.30


Consensus pattern (14 bp):   
CTCTGCCCTCTCCC
Done.