Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g01057.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 781

Length: 1303
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29


Found at i:1176 original size:6 final size:7

Alignment explanation


    Indices: 1159--1194  Score: 56
    Period size: 7  Copynumber: 5.3  Consensus size: 7

       1149 ATTAATATCT

                   
       1159 TTTTTGG
          1 TTTTTGG

                   
       1166 TTTTTGG
          1 TTTTTGG

                 * 
       1173 TTTTTTG
          1 TTTTTGG

                   
       1180 TTTTT-G
          1 TTTTTGG

                   
       1186 TTTTTGG
          1 TTTTTGG

              
       1193 TT
          1 TT

       1195 AATGTTTTTA


Statistics
Matches: 27,  Mismatches: 1, Indels: 2
        0.90            0.03        0.07

Matches are distributed among these distances:
   6    6  0.22
   7   21  0.78

ACGTcount: A:0.00, C:0.00, G:0.22, T:0.78


Consensus pattern (7 bp):   
TTTTTGG

Done.