Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g01067.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 856

Length: 1428
ACGTcount: A:0.29, C:0.14, G:0.20, T:0.37


Found at i:560 original size:6 final size:6

Alignment explanation


    Indices: 544--583  Score: 71
    Period size: 6  Copynumber: 6.7  Consensus size: 6

        534 ACTTGCTGGA

                   *                                      
        544 TTTTGG ATTTGG TTTTGG TTTTGG TTTTGG TTTTGG TTTT
          1 TTTTGG TTTTGG TTTTGG TTTTGG TTTTGG TTTTGG TTTT

        584 AAGTGCATAT


Statistics
Matches: 32,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
   6   32  1.00

ACGTcount: A:0.03, C:0.00, G:0.30, T:0.68


Consensus pattern (6 bp):   
TTTTGG

Found at i:688 original size:43 final size:43

Alignment explanation


    Indices: 625--723  Score: 171
    Period size: 43  Copynumber: 2.3  Consensus size: 43

        615 TTCTGCTGAC

                           *                           
        625 ATAACTTACTCAAAATAGTATATTTAAACTAATCTTTGAAGGG
          1 ATAACTTACTCAAAACAGTATATTTAAACTAATCTTTGAAGGG

                                                       
        668 ATAACTTACTCAAAACAGTATATTTAAACTAATCTTTGAAGGG
          1 ATAACTTACTCAAAACAGTATATTTAAACTAATCTTTGAAGGG

            *            
        711 CTATACTTACTCA
          1 ATA-ACTTACTCA

        724 TTAGATAACT


Statistics
Matches: 53,  Mismatches: 2, Indels: 1
        0.95            0.04        0.02

Matches are distributed among these distances:
  43   44  0.83
  44    9  0.17

ACGTcount: A:0.40, C:0.15, G:0.10, T:0.34


Consensus pattern (43 bp):   
ATAACTTACTCAAAACAGTATATTTAAACTAATCTTTGAAGGG

Found at i:835 original size:14 final size:14

Alignment explanation


    Indices: 816--853  Score: 76
    Period size: 14  Copynumber: 2.7  Consensus size: 14

        806 GTGCTTTCAT

                          
        816 GGTATAGAATTGCA
          1 GGTATAGAATTGCA

                          
        830 GGTATAGAATTGCA
          1 GGTATAGAATTGCA

                      
        844 GGTATAGAAT
          1 GGTATAGAAT

        854 AAAATCAGTA


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   24  1.00

ACGTcount: A:0.37, C:0.05, G:0.29, T:0.29


Consensus pattern (14 bp):   
GGTATAGAATTGCA
Done.