Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g01079.C1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3226
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34


Found at i:1822 original size:18 final size:18

Alignment explanation


    Indices: 1795--1830  Score: 63
    Period size: 18  Copynumber: 2.0  Consensus size: 18

       1785 TCAACCACAA

                 *            
       1795 TCATCGGATGTATGAGGT
          1 TCATCCGATGTATGAGGT

                              
       1813 TCATCCGATGTATGAGGT
          1 TCATCCGATGTATGAGGT

       1831 AACTAAAGTG


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  18   17  1.00

ACGTcount: A:0.22, C:0.14, G:0.31, T:0.33


Consensus pattern (18 bp):   
TCATCCGATGTATGAGGT
Done.