Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g01079.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1751
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.31


Found at i:347 original size:18 final size:18

Alignment explanation


    Indices: 320--355  Score: 63
    Period size: 18  Copynumber: 2.0  Consensus size: 18

        310 TCAACCACAA

                 *            
        320 TCATCGGATGTATGAGGT
          1 TCATCCGATGTATGAGGT

                              
        338 TCATCCGATGTATGAGGT
          1 TCATCCGATGTATGAGGT

        356 AACTAAAGTG


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  18   17  1.00

ACGTcount: A:0.22, C:0.14, G:0.31, T:0.33


Consensus pattern (18 bp):   
TCATCCGATGTATGAGGT
Done.