Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g01096.F5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5136
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.28


Found at i:230 original size:15 final size:15

Alignment explanation


    Indices: 210--266  Score: 80
    Period size: 15  Copynumber: 3.8  Consensus size: 15

        200 TTGGCCAAAA

                           
        210 ACCGCTGGTTCTGCT
          1 ACCGCTGGTTCTGCT

                      *    
        225 ACCGCTGGTTTTGCT
          1 ACCGCTGGTTCTGCT

             *              
        240 ATCGCTGGTT-TAGCT
          1 ACCGCTGGTTCT-GCT

                        
        255 ACCGCTGGTTCT
          1 ACCGCTGGTTCT

        267 TCTAATGACC


Statistics
Matches: 37,  Mismatches: 3, Indels: 3
        0.86            0.07        0.07

Matches are distributed among these distances:
  14    1  0.03
  15   35  0.95
  16    1  0.03

ACGTcount: A:0.09, C:0.28, G:0.26, T:0.37


Consensus pattern (15 bp):   
ACCGCTGGTTCTGCT
Done.