Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g01141.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2880
ACGTcount: A:0.31, C:0.14, G:0.20, T:0.36


Found at i:2139 original size:25 final size:25

Alignment explanation


    Indices: 2105--2154  Score: 100
    Period size: 25  Copynumber: 2.0  Consensus size: 25

       2095 CGATACACGG

                                     
       2105 GACCAAAGTATTGATAATTTATAGC
          1 GACCAAAGTATTGATAATTTATAGC

                                     
       2130 GACCAAAGTATTGATAATTTATAGC
          1 GACCAAAGTATTGATAATTTATAGC

       2155 AAGTACCAAT


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  25   25  1.00

ACGTcount: A:0.40, C:0.12, G:0.16, T:0.32


Consensus pattern (25 bp):   
GACCAAAGTATTGATAATTTATAGC
Done.