Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g01161.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2408
ACGTcount: A:0.33, C:0.14, G:0.24, T:0.29


Found at i:2181 original size:21 final size:21

Alignment explanation


    Indices: 2137--2189  Score: 70
    Period size: 21  Copynumber: 2.5  Consensus size: 21

       2127 AGGCAGTAGA

                    *       *    
       2137 GAGGGAGGGAGCGACAGCAAC
          1 GAGGGAGGCAGCGACAACAAC

                               * 
       2158 GAGGGAGGCAGCGACAACAGC
          1 GAGGGAGGCAGCGACAACAAC

               *       
       2179 GAGAGAGGCAG
          1 GAGGGAGGCAG

       2190 AGGCAGTAGC


Statistics
Matches: 28,  Mismatches: 4, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  21   28  1.00

ACGTcount: A:0.34, C:0.19, G:0.47, T:0.00


Consensus pattern (21 bp):   
GAGGGAGGCAGCGACAACAAC
Done.