Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g01164.F5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1806
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.31


Found at i:1728 original size:12 final size:12

Alignment explanation


    Indices: 1711--1735  Score: 50
    Period size: 12  Copynumber: 2.1  Consensus size: 12

       1701 ATTTGAAATC

                        
       1711 TATATATGTATG
          1 TATATATGTATG

                        
       1723 TATATATGTATG
          1 TATATATGTATG

             
       1735 T
          1 T

       1736 GTGTGTGGGT


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   13  1.00

ACGTcount: A:0.32, C:0.00, G:0.16, T:0.52


Consensus pattern (12 bp):   
TATATATGTATG
Done.