Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g01173.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1708
ACGTcount: A:0.28, C:0.19, G:0.20, T:0.33


Found at i:678 original size:3 final size:3

Alignment explanation


    Indices: 663--697  Score: 61
    Period size: 3  Copynumber: 11.7  Consensus size: 3

        653 TTTTCAATTT

                    *                                     
        663 TCA TCA CCA TCA TCA TCA TCA TCA TCA TCA TCA TC
          1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TC

        698 TTTTTACTGT


Statistics
Matches: 30,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
   3   30  1.00

ACGTcount: A:0.31, C:0.37, G:0.00, T:0.31


Consensus pattern (3 bp):   
TCA

Done.