Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g01178.N2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 788

Length: 1314
ACGTcount: A:0.22, C:0.23, G:0.17, T:0.38


Found at i:51 original size:34 final size:34

Alignment explanation


    Indices: 12--90  Score: 88
    Period size: 34  Copynumber: 2.3  Consensus size: 34

          2 TTCACTTTCC

                        *  **                  
         12 CTTTTATTTTTTTTCCTTTCCATTTT-TCCTCTTT
          1 CTTTTATTTTTTCTCAATTCCATTTTGT-CTCTTT

                    *                   *     
         46 CTTTTATTCTTTCTCAATTCCATTTTGTTTCTTT
          1 CTTTTATTTTTTCTCAATTCCATTTTGTCTCTTT

                 *     
         80 CTTTTCTTTTT
          1 CTTTTATTTTT

         91 AGTCTCCTCT


Statistics
Matches: 37,  Mismatches: 7, Indels: 2
        0.80            0.15        0.04

Matches are distributed among these distances:
  34   36  0.97
  35    1  0.03

ACGTcount: A:0.08, C:0.22, G:0.01, T:0.70


Consensus pattern (34 bp):   
CTTTTATTTTTTCTCAATTCCATTTTGTCTCTTT
Done.