Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g01181.P3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3681
ACGTcount: A:0.30, C:0.18, G:0.19, T:0.34


Found at i:1865 original size:21 final size:21

Alignment explanation


    Indices: 1840--1880  Score: 66
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       1830 AATTTTCAGT

                                  
       1840 CAAATATC-TTTAACCCTTTTC
          1 CAAATATCTTTTAA-CCTTTTC

                                
       1861 CAAATATCTTTTAACCTTTT
          1 CAAATATCTTTTAACCTTTT

       1881 GCCATAAGAT


Statistics
Matches: 19,  Mismatches: 0, Indels: 2
        0.90            0.00        0.10

Matches are distributed among these distances:
  21   14  0.74
  22    5  0.26

ACGTcount: A:0.29, C:0.24, G:0.00, T:0.46


Consensus pattern (21 bp):   
CAAATATCTTTTAACCTTTTC

Done.