Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g01195.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 398

Length: 664
ACGTcount: A:0.32, C:0.17, G:0.25, T:0.26


Found at i:610 original size:21 final size:21

Alignment explanation


    Indices: 584--626  Score: 68
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        574 ATACTTTTTC

                       *     *   
        584 AAAGTATTTTCTTTTGGGTTA
          1 AAAGTATTTTCCTTTGGATTA

                                 
        605 AAAGTATTTTCCTTTGGATTA
          1 AAAGTATTTTCCTTTGGATTA

             
        626 A
          1 A

        627 TAAATGAATA


Statistics
Matches: 20,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  21   20  1.00

ACGTcount: A:0.28, C:0.07, G:0.16, T:0.49


Consensus pattern (21 bp):   
AAAGTATTTTCCTTTGGATTA
Done.