Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g01220.N2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3458
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.32


Found at i:559 original size:6 final size:6

Alignment explanation


    Indices: 548--573  Score: 52
    Period size: 6  Copynumber: 4.3  Consensus size: 6

        538 ATTTAGATTA

                                          
        548 TGGGCT TGGGCT TGGGCT TGGGCT TG
          1 TGGGCT TGGGCT TGGGCT TGGGCT TG

        574 TATAATATTA


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   20  1.00

ACGTcount: A:0.00, C:0.15, G:0.50, T:0.35


Consensus pattern (6 bp):   
TGGGCT

Done.