Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g01238.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 897

Length: 1495
ACGTcount: A:0.29, C:0.16, G:0.23, T:0.33


Found at i:191 original size:12 final size:12

Alignment explanation


    Indices: 174--204  Score: 62
    Period size: 12  Copynumber: 2.6  Consensus size: 12

        164 ACCGATGGTT

                        
        174 GCTGAACCGAAA
          1 GCTGAACCGAAA

                        
        186 GCTGAACCGAAA
          1 GCTGAACCGAAA

                   
        198 GCTGAAC
          1 GCTGAAC

        205 AATCGATATC


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   19  1.00

ACGTcount: A:0.39, C:0.26, G:0.26, T:0.10


Consensus pattern (12 bp):   
GCTGAACCGAAA
Done.