Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g01252.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1671
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.29


Found at i:1443 original size:51 final size:51

Alignment explanation


    Indices: 1367--1468  Score: 186
    Period size: 51  Copynumber: 2.0  Consensus size: 51

       1357 CCATATCTGG

                                                               
       1367 GAAAATACTGCATCTCACCACCACCATAATGCCCATACCGAGGGTGAATAA
          1 GAAAATACTGCATCTCACCACCACCATAATGCCCATACCGAGGGTGAATAA

                                       *          *            
       1418 GAAAATACTGCATCTCACCACCACCATCATGCCCATACTGAGGGTGAATAA
          1 GAAAATACTGCATCTCACCACCACCATAATGCCCATACCGAGGGTGAATAA

       1469 AATATTTATT


Statistics
Matches: 49,  Mismatches: 2, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  51   49  1.00

ACGTcount: A:0.36, C:0.29, G:0.16, T:0.19


Consensus pattern (51 bp):   
GAAAATACTGCATCTCACCACCACCATAATGCCCATACCGAGGGTGAATAA
Done.