Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g01272.F7

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3120
ACGTcount: A:0.25, C:0.17, G:0.22, T:0.35


Found at i:2820 original size:35 final size:35

Alignment explanation


    Indices: 2781--2859  Score: 131
    Period size: 35  Copynumber: 2.3  Consensus size: 35

       2771 GATGTTATTG

                 *  *                          
       2781 ATTTATTATTTTATTATATTTTAAGTTGATTAAAC
          1 ATTTAGTAATTTATTATATTTTAAGTTGATTAAAC

                                               
       2816 ATTTAGTAATTTATTATATTTTAAGTTGATTAAAC
          1 ATTTAGTAATTTATTATATTTTAAGTTGATTAAAC

             *       
       2851 AGTTAGTAA
          1 ATTTAGTAA

       2860 GTTGACGAAG


Statistics
Matches: 41,  Mismatches: 3, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  35   41  1.00

ACGTcount: A:0.37, C:0.03, G:0.09, T:0.52


Consensus pattern (35 bp):   
ATTTAGTAATTTATTATATTTTAAGTTGATTAAAC
Done.