Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g01282.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 910

Length: 1518
ACGTcount: A:0.27, C:0.22, G:0.16, T:0.35


Found at i:68 original size:13 final size:13

Alignment explanation


    Indices: 50--83  Score: 59
    Period size: 13  Copynumber: 2.6  Consensus size: 13

         40 CATTGAAACG

                         
         50 TCTAAAATTTCCC
          1 TCTAAAATTTCCC

                         
         63 TCTAAAATTTCCC
          1 TCTAAAATTTCCC

            *       
         76 CCTAAAAT
          1 TCTAAAAT

         84 CGGTATCCCC


Statistics
Matches: 20,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  13   20  1.00

ACGTcount: A:0.35, C:0.29, G:0.00, T:0.35


Consensus pattern (13 bp):   
TCTAAAATTTCCC

Found at i:132 original size:14 final size:14

Alignment explanation


    Indices: 113--142  Score: 51
    Period size: 14  Copynumber: 2.1  Consensus size: 14

        103 CTAATTTTTC

                     *    
        113 CCCCAAATCGAAAT
          1 CCCCAAATCAAAAT

                          
        127 CCCCAAATCAAAAT
          1 CCCCAAATCAAAAT

              
        141 CC
          1 CC

        143 TTCCACCATT


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  14   15  1.00

ACGTcount: A:0.43, C:0.40, G:0.03, T:0.13


Consensus pattern (14 bp):   
CCCCAAATCAAAAT

Found at i:229 original size:14 final size:14

Alignment explanation


    Indices: 210--253  Score: 79
    Period size: 14  Copynumber: 3.1  Consensus size: 14

        200 ATTTCTTGCT

                          
        210 TCTCTAAATCTCCA
          1 TCTCTAAATCTCCA

                         *
        224 TCTCTAAATCTCCT
          1 TCTCTAAATCTCCA

                          
        238 TCTCTAAATCTCCA
          1 TCTCTAAATCTCCA

              
        252 TC
          1 TC

        254 CCTTTGATTT


Statistics
Matches: 28,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  14   28  1.00

ACGTcount: A:0.25, C:0.36, G:0.00, T:0.39


Consensus pattern (14 bp):   
TCTCTAAATCTCCA
Done.