Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g01300.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3761
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.28


Found at i:2397 original size:22 final size:25

Alignment explanation


    Indices: 2345--2397  Score: 60
    Period size: 22  Copynumber: 2.3  Consensus size: 25

       2335 TCAGAACTGG

                              *      
       2345 GGAAAAAGATAGAAAAGTTGGAAGA
          1 GGAAAAAGATAGAAAAGTAGGAAGA

                           *         
       2370 GG-AAAAGATA-AAATG-AGGAA-A
          1 GGAAAAAGATAGAAAAGTAGGAAGA

                   
       2391 GGAAAAA
          1 GGAAAAA

       2398 ACAAGGCCGA


Statistics
Matches: 25,  Mismatches: 2, Indels: 5
        0.78            0.06        0.16

Matches are distributed among these distances:
  21    3  0.12
  22    8  0.32
  23    4  0.16
  24    8  0.32
  25    2  0.08

ACGTcount: A:0.60, C:0.00, G:0.30, T:0.09


Consensus pattern (25 bp):   
GGAAAAAGATAGAAAAGTAGGAAGA

Found at i:3583 original size:7 final size:7

Alignment explanation


    Indices: 3542--3567  Score: 52
    Period size: 7  Copynumber: 3.7  Consensus size: 7

       3532 AATACAACCC

                   
       3542 AAAATAA
          1 AAAATAA

                   
       3549 AAAATAA
          1 AAAATAA

                   
       3556 AAAATAA
          1 AAAATAA

                 
       3563 AAAAT
          1 AAAAT

       3568 GAAGAAAAAG


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   7   19  1.00

ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15


Consensus pattern (7 bp):   
AAAATAA
Done.