Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g01301.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 901

Length: 1503
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.33


Found at i:980 original size:15 final size:15

Alignment explanation


    Indices: 960--992  Score: 57
    Period size: 15  Copynumber: 2.2  Consensus size: 15

        950 AGATTTCTTT

                           
        960 AAAAAAACAAAGGGG
          1 AAAAAAACAAAGGGG

                   *       
        975 AAAAAAATAAAGGGG
          1 AAAAAAACAAAGGGG

               
        990 AAA
          1 AAA

        993 TGAAGTTTTT


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  15   17  1.00

ACGTcount: A:0.70, C:0.03, G:0.24, T:0.03


Consensus pattern (15 bp):   
AAAAAAACAAAGGGG

Found at i:1427 original size:20 final size:19

Alignment explanation


    Indices: 1397--1440  Score: 61
    Period size: 20  Copynumber: 2.3  Consensus size: 19

       1387 AATTTTGTTA

                         *  *  
       1397 TATTTTTTATTTAGCCTTT
          1 TATTTTTTATTTACCCATT

                                
       1416 TATTTCTTTATTTACCCATT
          1 TATTT-TTTATTTACCCATT

                 
       1436 TATTT
          1 TATTT

       1441 ATTTCCTTTT


Statistics
Matches: 22,  Mismatches: 2, Indels: 1
        0.88            0.08        0.04

Matches are distributed among these distances:
  19    5  0.23
  20   17  0.77

ACGTcount: A:0.18, C:0.14, G:0.02, T:0.66


Consensus pattern (19 bp):   
TATTTTTTATTTACCCATT
Done.