Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g01303.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3163
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30


Found at i:671 original size:51 final size:51

Alignment explanation


    Indices: 611--713  Score: 206
    Period size: 51  Copynumber: 2.0  Consensus size: 51

        601 GGAATTTGAA

                                                               
        611 GTAAGGTACTATAACCTGTATGTTTAGATCCTGCAAGCATAAAAGTCACCT
          1 GTAAGGTACTATAACCTGTATGTTTAGATCCTGCAAGCATAAAAGTCACCT

                                                               
        662 GTAAGGTACTATAACCTGTATGTTTAGATCCTGCAAGCATAAAAGTCACCT
          1 GTAAGGTACTATAACCTGTATGTTTAGATCCTGCAAGCATAAAAGTCACCT

             
        713 G
          1 G

        714 AAAATTGGGA


Statistics
Matches: 52,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  51   52  1.00

ACGTcount: A:0.33, C:0.19, G:0.18, T:0.29


Consensus pattern (51 bp):   
GTAAGGTACTATAACCTGTATGTTTAGATCCTGCAAGCATAAAAGTCACCT
Done.