Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g01305.N116

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3126
ACGTcount: A:0.29, C:0.17, G:0.16, T:0.38


Found at i:1180 original size:23 final size:23

Alignment explanation


    Indices: 1148--1191  Score: 70
    Period size: 23  Copynumber: 1.9  Consensus size: 23

       1138 GCAATCTACT

                                   
       1148 GACTAATTGTTTTTGCTTAAGAG
          1 GACTAATTGTTTTTGCTTAAGAG

                 *         *     
       1171 GACTACTTGTTTTTGTTTAAG
          1 GACTAATTGTTTTTGCTTAAG

       1192 CAGATCCATC


Statistics
Matches: 19,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  23   19  1.00

ACGTcount: A:0.23, C:0.09, G:0.20, T:0.48


Consensus pattern (23 bp):   
GACTAATTGTTTTTGCTTAAGAG
Done.