Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g01328.C1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1944
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.30


Found at i:1385 original size:14 final size:14

Alignment explanation


    Indices: 1366--1395  Score: 60
    Period size: 14  Copynumber: 2.1  Consensus size: 14

       1356 GATAATGTCT

                          
       1366 ATGAAGGCAAAGAA
          1 ATGAAGGCAAAGAA

                          
       1380 ATGAAGGCAAAGAA
          1 ATGAAGGCAAAGAA

              
       1394 AT
          1 AT

       1396 AGGAGGTTGT


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   16  1.00

ACGTcount: A:0.57, C:0.07, G:0.27, T:0.10


Consensus pattern (14 bp):   
ATGAAGGCAAAGAA
Done.