Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g01330.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3302
ACGTcount: A:0.28, C:0.16, G:0.22, T:0.33


Found at i:213 original size:17 final size:17

Alignment explanation


    Indices: 191--226  Score: 56
    Period size: 17  Copynumber: 2.1  Consensus size: 17

        181 CAAGACATGC

                              
        191 AAGCAAGAAGCCAAG-CA
          1 AAGCAAGAA-CCAAGACA

                             
        208 AAGCAAGAACCAAGACA
          1 AAGCAAGAACCAAGACA

              
        225 AA
          1 AA

        227 ATTTCAGGTA


Statistics
Matches: 18,  Mismatches: 0, Indels: 2
        0.90            0.00        0.10

Matches are distributed among these distances:
  16    5  0.28
  17   13  0.72

ACGTcount: A:0.58, C:0.22, G:0.19, T:0.00


Consensus pattern (17 bp):   
AAGCAAGAACCAAGACA
Done.