Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g01332.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4050
ACGTcount: A:0.31, C:0.14, G:0.17, T:0.37


Found at i:3506 original size:15 final size:16

Alignment explanation


    Indices: 3486--3516  Score: 55
    Period size: 15  Copynumber: 2.0  Consensus size: 16

       3476 GTTTTTGTCT

                            
       3486 TATATATGAT-TAAAA
          1 TATATATGATCTAAAA

                            
       3501 TATATATGATCTAAAA
          1 TATATATGATCTAAAA

       3517 GCAAGAGAGA


Statistics
Matches: 15,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  15   10  0.67
  16    5  0.33

ACGTcount: A:0.52, C:0.03, G:0.06, T:0.39


Consensus pattern (16 bp):   
TATATATGATCTAAAA
Done.