Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g01343.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2859
ACGTcount: A:0.27, C:0.16, G:0.23, T:0.33


Found at i:793 original size:42 final size:42

Alignment explanation


    Indices: 731--810  Score: 108
    Period size: 42  Copynumber: 1.9  Consensus size: 42

        721 TGAAAAGTTT

                           *        *  *  *           
        731 GTTAGGAAAACTGATGATAGATGGTTGGCATCTTTTCTGTTA
          1 GTTAGGAAAACTGATCATAGATGGCTGACAGCTTTTCTGTTA

                                                   
        773 GTTAGGAAAATCT-ATCATAGATGGCTGACAGCTTTTCT
          1 GTTAGGAAAA-CTGATCATAGATGGCTGACAGCTTTTCT

        811 TGACTGTTTC


Statistics
Matches: 33,  Mismatches: 4, Indels: 2
        0.85            0.10        0.05

Matches are distributed among these distances:
  42   31  0.94
  43    2  0.06

ACGTcount: A:0.28, C:0.12, G:0.24, T:0.36


Consensus pattern (42 bp):   
GTTAGGAAAACTGATCATAGATGGCTGACAGCTTTTCTGTTA
Done.