Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00231.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3054
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.32


Found at i:2370 original size:16 final size:15

Alignment explanation


    Indices: 2343--2382  Score: 53
    Period size: 16  Copynumber: 2.5  Consensus size: 15

       2333 TAACTCATTC

                           
       2343 TTTAATTTTATAATT
          1 TTTAATTTTATAATT

                         *  
       2358 TTTAATCTTTATACTT
          1 TTTAAT-TTTATAATT

                     
       2374 TTTATATTT
          1 TTTA-ATTT

       2383 GTATTAATAG


Statistics
Matches: 22,  Mismatches: 1, Indels: 3
        0.85            0.04        0.12

Matches are distributed among these distances:
  15    6  0.27
  16   14  0.64
  17    2  0.09

ACGTcount: A:0.28, C:0.05, G:0.00, T:0.68


Consensus pattern (15 bp):   
TTTAATTTTATAATT
Done.