Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00232.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2545
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27


Found at i:2442 original size:14 final size:16

Alignment explanation


    Indices: 2418--2451  Score: 54
    Period size: 15  Copynumber: 2.2  Consensus size: 16

       2408 ACTTATAGGG

                            
       2418 TTTTCATTTTTAA-TT
          1 TTTTCATTTTTAACTT

                            
       2433 TTTTCA-TTTTAACTT
          1 TTTTCATTTTTAACTT

                
       2448 TTTT
          1 TTTT

       2452 TGTTTCAAAG


Statistics
Matches: 18,  Mismatches: 0, Indels: 2
        0.90            0.00        0.10

Matches are distributed among these distances:
  14    6  0.33
  15   12  0.67

ACGTcount: A:0.18, C:0.09, G:0.00, T:0.74


Consensus pattern (16 bp):   
TTTTCATTTTTAACTT
Done.