Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g01356.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1694
ACGTcount: A:0.28, C:0.17, G:0.22, T:0.33


Found at i:1617 original size:36 final size:36

Alignment explanation


    Indices: 1576--1647  Score: 144
    Period size: 36  Copynumber: 2.0  Consensus size: 36

       1566 TCATCTACAA

                                                
       1576 CTTTCTTTTCTTAACTATGCTTTTGATGATTAGATT
          1 CTTTCTTTTCTTAACTATGCTTTTGATGATTAGATT

                                                
       1612 CTTTCTTTTCTTAACTATGCTTTTGATGATTAGATT
          1 CTTTCTTTTCTTAACTATGCTTTTGATGATTAGATT

       1648 GTTTAGAAAG


Statistics
Matches: 36,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  36   36  1.00

ACGTcount: A:0.19, C:0.14, G:0.11, T:0.56


Consensus pattern (36 bp):   
CTTTCTTTTCTTAACTATGCTTTTGATGATTAGATT

Done.