Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g01361.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3835
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.32


Found at i:3308 original size:24 final size:25

Alignment explanation


    Indices: 3281--3338  Score: 77
    Period size: 24  Copynumber: 2.4  Consensus size: 25

       3271 GTCTTCGCAG

                           *  *      
       3281 CAGCCA-CAGCCACAGTCTCAGCCT
          1 CAGCCAGCAGCCACAATCCCAGCCT

                                     
       3305 CAG-CAGCAGCCACAATCCCAGCCT
          1 CAGCCAGCAGCCACAATCCCAGCCT

                       
       3329 CAG-CAGCAGC
          1 CAGCCAGCAGC

       3339 AGCAGCCAGC


Statistics
Matches: 31,  Mismatches: 2, Indels: 2
        0.89            0.06        0.06

Matches are distributed among these distances:
  23    2  0.06
  24   29  0.94

ACGTcount: A:0.28, C:0.45, G:0.19, T:0.09


Consensus pattern (25 bp):   
CAGCCAGCAGCCACAATCCCAGCCT

Found at i:3331 original size:30 final size:30

Alignment explanation


    Indices: 3277--3346  Score: 88
    Period size: 30  Copynumber: 2.3  Consensus size: 30

       3267 CTCAGTCTTC

                               *      **  
       3277 GCAGCAGCCACAGCCACAGTCTCAGCCTCA
          1 GCAGCAGCCACAGCCACAGCCTCAGCAGCA

                         *                 
       3307 GCAGCAGCCACAATCC-CAGCCTCAGCAGCA
          1 GCAGCAGCCAC-AGCCACAGCCTCAGCAGCA

                      
       3337 GCAGCAGCCA
          1 GCAGCAGCCA

       3347 GCCACTGGAG


Statistics
Matches: 35,  Mismatches: 4, Indels: 2
        0.85            0.10        0.05

Matches are distributed among these distances:
  30   32  0.91
  31    3  0.09

ACGTcount: A:0.29, C:0.43, G:0.21, T:0.07


Consensus pattern (30 bp):   
GCAGCAGCCACAGCCACAGCCTCAGCAGCA
Done.