Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g01365.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3813
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30


Found at i:3590 original size:24 final size:23

Alignment explanation


    Indices: 3545--3591  Score: 60
    Period size: 23  Copynumber: 2.0  Consensus size: 23

       3535 AGGTAAGAAC

                          *        
       3545 GGTAAATGAGAAGTGAAAAAAGG
          1 GGTAAATGAGAAGTAAAAAAAGG

                                     
       3568 GGTAAATGAGGAAG-AAAATAAAGG
          1 GGTAAATGA-GAAGTAAAA-AAAGG

       3592 CTGGTTAGTG


Statistics
Matches: 21,  Mismatches: 1, Indels: 3
        0.84            0.04        0.12

Matches are distributed among these distances:
  23   12  0.57
  24    9  0.43

ACGTcount: A:0.53, C:0.00, G:0.34, T:0.13


Consensus pattern (23 bp):   
GGTAAATGAGAAGTAAAAAAAGG
Done.