Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00234.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2583
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30


Found at i:427 original size:24 final size:24

Alignment explanation


    Indices: 400--447  Score: 96
    Period size: 24  Copynumber: 2.0  Consensus size: 24

        390 CGCTAAGTTC

                                    
        400 ACCGTTTTAGCTTCAGGGTTCGAG
          1 ACCGTTTTAGCTTCAGGGTTCGAG

                                    
        424 ACCGTTTTAGCTTCAGGGTTCGAG
          1 ACCGTTTTAGCTTCAGGGTTCGAG

        448 CTTTTATCGA


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  24   24  1.00

ACGTcount: A:0.17, C:0.21, G:0.29, T:0.33


Consensus pattern (24 bp):   
ACCGTTTTAGCTTCAGGGTTCGAG
Done.