Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g01374.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 528

Length: 881
ACGTcount: A:0.24, C:0.20, G:0.16, T:0.40


Found at i:126 original size:18 final size:17

Alignment explanation


    Indices: 103--145  Score: 61
    Period size: 18  Copynumber: 2.5  Consensus size: 17

         93 GCCATCATCC

                         *    
        103 TTCCTTCTTCCTTTTGTT
          1 TTCCTTCTTCCTTCT-TT

                             
        121 TTCCTTCTTCCTTCTTT
          1 TTCCTTCTTCCTTCTTT

                     
        138 TT-CTTCTT
          1 TTCCTTCTT

        146 TCAAGGATTC


Statistics
Matches: 24,  Mismatches: 1, Indels: 2
        0.89            0.04        0.07

Matches are distributed among these distances:
  16    6  0.25
  17    4  0.17
  18   14  0.58

ACGTcount: A:0.00, C:0.30, G:0.02, T:0.67


Consensus pattern (17 bp):   
TTCCTTCTTCCTTCTTT
Done.