Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g01384.P6

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4165
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.35


Found at i:3930 original size:12 final size:13

Alignment explanation


    Indices: 3903--3943  Score: 50
    Period size: 12  Copynumber: 3.3  Consensus size: 13

       3893 TTGAGAAGAA

                *        
       3903 GAAAGGAAAAATG
          1 GAAAAGAAAAATG

                         
       3916 GAAAAGAAAAA-G
          1 GAAAAGAAAAATG

                        *
       3928 GAAAA-AAAAATT
          1 GAAAAGAAAAATG

                
       3940 GAAA
          1 GAAA

       3944 TAGTATAAAA


Statistics
Matches: 25,  Mismatches: 2, Indels: 3
        0.83            0.07        0.10

Matches are distributed among these distances:
  11    5  0.20
  12   10  0.40
  13   10  0.40

ACGTcount: A:0.71, C:0.00, G:0.22, T:0.07


Consensus pattern (13 bp):   
GAAAAGAAAAATG
Done.