Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g01402.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2634
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32


Found at i:2081 original size:16 final size:16

Alignment explanation


    Indices: 2060--2093  Score: 68
    Period size: 16  Copynumber: 2.1  Consensus size: 16

       2050 CGCTCTGATA

                            
       2060 ATTCCGTAAGCTACAT
          1 ATTCCGTAAGCTACAT

                            
       2076 ATTCCGTAAGCTACAT
          1 ATTCCGTAAGCTACAT

              
       2092 AT
          1 AT

       2094 ATGACCTTGA


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  16   18  1.00

ACGTcount: A:0.32, C:0.24, G:0.12, T:0.32


Consensus pattern (16 bp):   
ATTCCGTAAGCTACAT
Done.