Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g01402.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5925
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.34


Found at i:2924 original size:41 final size:41

Alignment explanation


    Indices: 2877--2957  Score: 153
    Period size: 41  Copynumber: 2.0  Consensus size: 41

       2867 ATATTTTATT

                          *                          
       2877 TTATCTTTTAGTAGTTTATTAGAATAAGGGAATTATTTTCC
          1 TTATCTTTTAGTAGCTTATTAGAATAAGGGAATTATTTTCC

                                                    
       2918 TTATCTTTTAGTAGCTTATTAGAATAAGGGAATTATTTTC
          1 TTATCTTTTAGTAGCTTATTAGAATAAGGGAATTATTTTC

       2958 TCAATTAGGT


Statistics
Matches: 39,  Mismatches: 1, Indels: 0
        0.98            0.03        0.00

Matches are distributed among these distances:
  41   39  1.00

ACGTcount: A:0.30, C:0.07, G:0.15, T:0.48


Consensus pattern (41 bp):   
TTATCTTTTAGTAGCTTATTAGAATAAGGGAATTATTTTCC

Found at i:5372 original size:16 final size:16

Alignment explanation


    Indices: 5351--5384  Score: 68
    Period size: 16  Copynumber: 2.1  Consensus size: 16

       5341 CGCTCTGATA

                            
       5351 ATTCCGTAAGCTACAT
          1 ATTCCGTAAGCTACAT

                            
       5367 ATTCCGTAAGCTACAT
          1 ATTCCGTAAGCTACAT

              
       5383 AT
          1 AT

       5385 ATGACCTTGA


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  16   18  1.00

ACGTcount: A:0.32, C:0.24, G:0.12, T:0.32


Consensus pattern (16 bp):   
ATTCCGTAAGCTACAT
Done.