Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g01404.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 656

Length: 1094
ACGTcount: A:0.37, C:0.15, G:0.14, T:0.34


Found at i:238 original size:15 final size:15

Alignment explanation


    Indices: 215--252  Score: 67
    Period size: 15  Copynumber: 2.5  Consensus size: 15

        205 TCAACTCGAC

                *          
        215 TAACACGAAAATTTT
          1 TAACTCGAAAATTTT

                           
        230 TAACTCGAAAATTTT
          1 TAACTCGAAAATTTT

                    
        245 TAACTCGA
          1 TAACTCGA

        253 TTTGACTTTA


Statistics
Matches: 22,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  15   22  1.00

ACGTcount: A:0.42, C:0.16, G:0.08, T:0.34


Consensus pattern (15 bp):   
TAACTCGAAAATTTT
Done.