Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga02g00239.M2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 5456
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.31
Found at i:194 original size:3 final size:3
Alignment explanation
Indices: 186--218 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
176 CCTCCCACTT
186 CAC CAC CAC CAC CAC CAC CAC CAC CAC CAC CAC
1 CAC CAC CAC CAC CAC CAC CAC CAC CAC CAC CAC
219 TTCTCCTCCC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.33, C:0.67, G:0.00, T:0.00
Consensus pattern (3 bp):
CAC
Found at i:3951 original size:105 final size:105
Alignment explanation
Indices: 3769--3973 Score: 383
Period size: 105 Copynumber: 2.0 Consensus size: 105
3759 GTGCGAGTTA
3769 AACAATGTGAAGTTGCCTAATCTCGTGGAGTCCACTTTAAATCAGGTCTATCCGCCTCGTGCAAC
1 AACAATGTGAAGTTGCCTAATCTCGTGGAGTCCACTTTAAATCAGGTCTATCCGCCTCGTGCAAC
3834 TAAGGTTAAGAAGTTGGTTGAGGACTTGAAGAGTAAATCC
66 TAAGGTTAAGAAGTTGGTTGAGGACTTGAAGAGTAAATCC
* * *
3874 AACAATGTGAAGTTGCCTGATCTCGTGGAGTCCACTTTAAATCAGGTCTATCCGCCTCGTGTATC
1 AACAATGTGAAGTTGCCTAATCTCGTGGAGTCCACTTTAAATCAGGTCTATCCGCCTCGTGCAAC
3939 TAAGGTTAAGAAGTTGGTTGAGGACTTGAAGAGTA
66 TAAGGTTAAGAAGTTGGTTGAGGACTTGAAGAGTA
3974 CATCAACTGA
Statistics
Matches: 97, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
105 97 1.00
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (105 bp):
AACAATGTGAAGTTGCCTAATCTCGTGGAGTCCACTTTAAATCAGGTCTATCCGCCTCGTGCAAC
TAAGGTTAAGAAGTTGGTTGAGGACTTGAAGAGTAAATCC
Done.