Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00239.M3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2663
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.31


Found at i:1158 original size:105 final size:105

Alignment explanation


    Indices: 976--1180  Score: 383
    Period size: 105  Copynumber: 2.0  Consensus size: 105

        966 GTGCGAGTTA

                                                                             
        976 AACAATGTGAAGTTGCCTAATCTCGTGGAGTCCACTTTAAATCAGGTCTATCCGCCTCGTGCAAC
          1 AACAATGTGAAGTTGCCTAATCTCGTGGAGTCCACTTTAAATCAGGTCTATCCGCCTCGTGCAAC

                                                    
       1041 TAAGGTTAAGAAGTTGGTTGAGGACTTGAAGAGTAAATCC
         66 TAAGGTTAAGAAGTTGGTTGAGGACTTGAAGAGTAAATCC

                              *                                          * * 
       1081 AACAATGTGAAGTTGCCTGATCTCGTGGAGTCCACTTTAAATCAGGTCTATCCGCCTCGTGTATC
          1 AACAATGTGAAGTTGCCTAATCTCGTGGAGTCCACTTTAAATCAGGTCTATCCGCCTCGTGCAAC

                                               
       1146 TAAGGTTAAGAAGTTGGTTGAGGACTTGAAGAGTA
         66 TAAGGTTAAGAAGTTGGTTGAGGACTTGAAGAGTA

       1181 CATCAACTGA


Statistics
Matches: 97,  Mismatches: 3, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
 105   97  1.00

ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29


Consensus pattern (105 bp):   
AACAATGTGAAGTTGCCTAATCTCGTGGAGTCCACTTTAAATCAGGTCTATCCGCCTCGTGCAAC
TAAGGTTAAGAAGTTGGTTGAGGACTTGAAGAGTAAATCC
Done.