Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g01434.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1726
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.33


Found at i:975 original size:18 final size:18

Alignment explanation


    Indices: 941--990  Score: 55
    Period size: 18  Copynumber: 2.8  Consensus size: 18

        931 TACGTATACT

                        *     
        941 TATACGTATATGTATATG
          1 TATACGTATATGCATATG

                     *        
        959 TATACGTATCTGCATATG
          1 TATACGTATATGCATATG

            *   * *       
        977 CATATGCATATGCA
          1 TATACGTATATGCA

        991 CGTCTATAAA


Statistics
Matches: 26,  Mismatches: 6, Indels: 0
        0.81            0.19        0.00

Matches are distributed among these distances:
  18   26  1.00

ACGTcount: A:0.32, C:0.14, G:0.16, T:0.38


Consensus pattern (18 bp):   
TATACGTATATGCATATG
Done.