Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g01464.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3271
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.34


Found at i:1592 original size:42 final size:42

Alignment explanation


    Indices: 1546--1633  Score: 167
    Period size: 42  Copynumber: 2.1  Consensus size: 42

       1536 CAATATGTAC

                                 *                    
       1546 GAAGGGGTTACATTCAAATACTATAGTTTCAGATTGCATATT
          1 GAAGGGGTTACATTCAAATACCATAGTTTCAGATTGCATATT

                                                      
       1588 GAAGGGGTTACATTCAAATACCATAGTTTCAGATTGCATATT
          1 GAAGGGGTTACATTCAAATACCATAGTTTCAGATTGCATATT

                
       1630 GAAG
          1 GAAG

       1634 TGTGTTTGAA


Statistics
Matches: 45,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  42   45  1.00

ACGTcount: A:0.34, C:0.12, G:0.20, T:0.33


Consensus pattern (42 bp):   
GAAGGGGTTACATTCAAATACCATAGTTTCAGATTGCATATT
Done.