Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g01468.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 426

Length: 711
ACGTcount: A:0.32, C:0.20, G:0.19, T:0.29


Found at i:22 original size:6 final size:6

Alignment explanation


    Indices: 13--37  Score: 50
    Period size: 6  Copynumber: 4.2  Consensus size: 6

          3 AAATAAAAGA

                                         
         13 GAGAGC GAGAGC GAGAGC GAGAGC G
          1 GAGAGC GAGAGC GAGAGC GAGAGC G

         38 CTAAGTTATA


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   19  1.00

ACGTcount: A:0.32, C:0.16, G:0.52, T:0.00


Consensus pattern (6 bp):   
GAGAGC

Done.