Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g01470.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2467
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29


Found at i:37 original size:5 final size:5

Alignment explanation


    Indices: 27--67  Score: 64
    Period size: 5  Copynumber: 8.0  Consensus size: 5

         17 CGGAAAAAGC

                                        *                   
         27 GAAAA GAAAA GAAAA GAAAA GAAAC GAAAA GAAAA GGAAAA
          1 GAAAA GAAAA GAAAA GAAAA GAAAA GAAAA GAAAA -GAAAA

         68 TTAAAAACCC


Statistics
Matches: 33,  Mismatches: 2, Indels: 1
        0.92            0.06        0.03

Matches are distributed among these distances:
   5   28  0.85
   6    5  0.15

ACGTcount: A:0.76, C:0.02, G:0.22, T:0.00


Consensus pattern (5 bp):   
GAAAA

Found at i:2369 original size:23 final size:23

Alignment explanation


    Indices: 2337--2385  Score: 71
    Period size: 23  Copynumber: 2.1  Consensus size: 23

       2327 CCTAGGTCTG

                                   
       2337 GAAAGAACAATACGCTGAAACTT
          1 GAAAGAACAATACGCTGAAACTT

                 *      *      *   
       2360 GAAAGGACAATATGCTGAAGCTT
          1 GAAAGAACAATACGCTGAAACTT

               
       2383 GAA
          1 GAA

       2386 CTCTGATTTC


Statistics
Matches: 23,  Mismatches: 3, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  23   23  1.00

ACGTcount: A:0.45, C:0.14, G:0.22, T:0.18


Consensus pattern (23 bp):   
GAAAGAACAATACGCTGAAACTT
Done.