Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g01496.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3699
ACGTcount: A:0.29, C:0.16, G:0.22, T:0.33


Found at i:83 original size:21 final size:18

Alignment explanation


    Indices: 40--75  Score: 72
    Period size: 18  Copynumber: 2.0  Consensus size: 18

         30 CGTTTTTCCA

                              
         40 ACATGGTTGAAGCAGCAG
          1 ACATGGTTGAAGCAGCAG

                              
         58 ACATGGTTGAAGCAGCAG
          1 ACATGGTTGAAGCAGCAG

         76 TAACCATGTA


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   18  1.00

ACGTcount: A:0.33, C:0.17, G:0.33, T:0.17


Consensus pattern (18 bp):   
ACATGGTTGAAGCAGCAG

Found at i:1333 original size:13 final size:13

Alignment explanation


    Indices: 1315--1341  Score: 54
    Period size: 13  Copynumber: 2.1  Consensus size: 13

       1305 TATGATCTAT

                         
       1315 GTTCTTTTGTTAC
          1 GTTCTTTTGTTAC

                         
       1328 GTTCTTTTGTTAC
          1 GTTCTTTTGTTAC

             
       1341 G
          1 G

       1342 GGGCTGAAAG


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   14  1.00

ACGTcount: A:0.07, C:0.15, G:0.19, T:0.59


Consensus pattern (13 bp):   
GTTCTTTTGTTAC
Done.