Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g01497.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 232

Length: 388
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.31


Found at i:330 original size:27 final size:27

Alignment explanation


    Indices: 268--333  Score: 71
    Period size: 27  Copynumber: 2.4  Consensus size: 27

        258 TCTTTGAGTC

                     * *               
        268 CAATTGGGTCTCGCGTTTGGGTTATTA
          1 CAATTGGGTTTAGCGTTTGGGTTATTA

            *   *        *              
        295 GAATCGGGTTTAGGGTTTGGGTTTATT-
          1 CAATTGGGTTTAGCGTTTGGG-TTATTA

                        
        322 CAATTGGGTTTA
          1 CAATTGGGTTTA

        334 AAAAAATGTA


Statistics
Matches: 31,  Mismatches: 7, Indels: 2
        0.77            0.17        0.05

Matches are distributed among these distances:
  27   26  0.84
  28    5  0.16

ACGTcount: A:0.17, C:0.09, G:0.32, T:0.42


Consensus pattern (27 bp):   
CAATTGGGTTTAGCGTTTGGGTTATTA
Done.