Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g01505.C2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1698
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.35


Found at i:919 original size:9 final size:9

Alignment explanation


    Indices: 905--932  Score: 56
    Period size: 9  Copynumber: 3.1  Consensus size: 9

        895 AATAAAAAAA

                     
        905 TGATGATGC
          1 TGATGATGC

                     
        914 TGATGATGC
          1 TGATGATGC

                     
        923 TGATGATGC
          1 TGATGATGC

             
        932 T
          1 T

        933 TGATTGCCAT


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   19  1.00

ACGTcount: A:0.21, C:0.11, G:0.32, T:0.36


Consensus pattern (9 bp):   
TGATGATGC
Done.