Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g01508.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 425

Length: 709
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29


Found at i:309 original size:48 final size:48

Alignment explanation


    Indices: 253--422  Score: 243
    Period size: 48  Copynumber: 3.5  Consensus size: 48

        243 GTGTAACTAC

                        *          *        *               
        253 GTAAGACCATGTTTGGGACATGGAATCAGCATTGTTATGTGAGCCAGT
          1 GTAAGACCATGTCTGGGACATGGCATCAGCATAGTTATGTGAGCCAGT

                                       *             *       
        301 GTAAGACCATGTCTGGGACATGGCATCGGCATCA-TTATGTAAGCCAGT
          1 GTAAGACCATGTCTGGGACATGGCATCAGCAT-AGTTATGTGAGCCAGT

            *   *                       *                   
        349 ATAAAACCATGTCTGGGACATGGCATCAACATAGTTATGTGAGCCAGT
          1 GTAAGACCATGTCTGGGACATGGCATCAGCATAGTTATGTGAGCCAGT

                          *           
        397 GTAAGACCATGTCTAGGACATGGCAT
          1 GTAAGACCATGTCTGGGACATGGCAT

        423 TGGCATGAGG


Statistics
Matches: 107,  Mismatches: 13, Indels: 4
        0.86            0.10        0.03

Matches are distributed among these distances:
  47    1  0.01
  48  106  0.99

ACGTcount: A:0.29, C:0.18, G:0.26, T:0.26


Consensus pattern (48 bp):   
GTAAGACCATGTCTGGGACATGGCATCAGCATAGTTATGTGAGCCAGT
Done.